Transcriptome projects
Sea urchin transcriptome (genome tiling)
Samanta MP et al., The transcriptome of the sea urchin embryo. Science. 2006.
Sea Urchin Genome Sequencing Consortium, The genome of the sea urchin Strongylocentrotus purpuratus. Science. 2006.
Yeast transcriptome (genome tiling)
Samanta MP et al., Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. PNAS 2006.
Arabidopsis transcriptome (genome tiling)
Stolc V, Samanta MP et al., Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. PNAS 2005.
Honey bee transcriptome (genome tiling)
Honeybee Genome Sequencing Consortium, Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006.
Weaver DB et al., Computational and transcriptional evidence for microRNAs in the honey bee genome. Genome Biol. 2007.
Diatom transcriptome (genome tiling)
Mock T et al., Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. PNAS 2008.