Research
We currently focus on three areas of research:
(A) Nucleotide level understanding of new genomes
We perform computational analysis of new genome sequences to find unusual features. This is helpful in understanding all sequences from an evolutionary perspectives, as well as in designing arrays to perform transcriptome experiments. The results are continually updated in the following website: here.
We also developed algorithms to determine protein functions, and understand unusual features of the protein interaction network. Those algorithms are described in the following manuscripts.
(i) Global Snapshot of Protein Interaction Network in Yeast,
(ii) Common partners of proteins,
(B) Empirical determination of transcriptomes of newly sequenced organisms using tiling arrays
(i) The transcriptome of sea urchin embryo,
(ii) Analysis of genome-wide transcriptional profile of the plant Arabidopsis thaliana,
(iii) Flagellar regeneration in Chlamydomonas reinhardtii,
(iv) Global Snapshot of Protein Interaction Network in Yeast.
If any of the links above is password protected, we are waiting for one or more of our submitted papers to be published. Please contact [info@systemix.org] to request additional information.