Arabidopsis thaliana transcriptome (tiling array)
Here we present the data from tiling-probe microarray experiment on the Arabidopsis thaliana genome. The probes used in this experiment are 36-mer oligonucleotides chosen uniformly from the whole genome. Measurement was conducted with mRNA samples extracted from the T87 cell-line.
Following options are provided for accessing the data:
| a) Access all the supplemental information submitted with the paper. |
| b) Download raw measurement data. |
| c) Enter the name of a gene or intron region you are interested in and see plots of signals on both strands for that region. |
| d) Enter the first and last nucleotide locations of chromosomal segment and view signal for the region. |
Reference: Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman, MR, "Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays," Proc Natl Acad Sci USA. (2005) 102(12):4453-8. PNAS, pubmed.
Data from a previous microarray experiment by Yamada et al. (Science,302,842-846,2003) conducted on four different cell-types using 25-mer oligonucleotide probes are also plotted here so that users can make easy comparisons.
a) Supplemental information submitted with the paperDownload here (PNAS website).
Excel file for supplementary table 1.
Excel file for supplementary table 2.
Excel file for supplementary table 3.
b) Download raw-data
Download tab delimited files.
Distribution of data from individual arrays are plotted here. These datasets can be downloaded here from the NCBI GEO database (accession code: GSE2247).
c) Hybridization signals of mRNAs for individual genes
View by Gene ID
d) Hybridization signal at chosen region of the chromosome
or with more options (linear vs log., choice of cell-line, etc.):