Clustering of Protein Data Reveals Functional Groups
[Cutoff of log(p)=-8.005 is chosen.]
Run the program for other cutoff [enter log(p) value]:
| 1 |
(YDR036C, (MRP4,MRPS5) ) |
| 2 |
(GAL11, ( ( (ROX3,SRB6) ,MED2) ,MED7) ) |
| 3 |
(CDC53,SKP1) |
| 4 |
(BET3,TRS20) |
| 5 |
( ( (CKA2,CKB1) ,CKA1) ,CKB2) |
| 6 |
( (PRP45,CEF1) ,YJU2) |
| 7 |
(GDI1, (YIF1, (YGL161C,YGL198W) ) ) |
| 8 |
(CCT5, ( ( (CCT3,CCT2) ,TCP1) ,CCT6) ) |
| 9 |
(DIG2,DIG1) |
| 10 |
(RVS161,RVS167) |
| 11 |
(ZDS1,ZDS2) |
| 12 |
(YPL070W, ( (KAP95,SRP1) ,TEM1) ) |
| 13 |
(MAG1,YLR427W) |
| 14 |
( (RPC25, (RPC34,RPO31) ) ,RPC40) |
| 15 |
(YNL207W,TSR1) |
| 16 |
(MCM3,MCM2) |
| 17 |
( (STT3,SWP1) , ( ( ( (OST2,OST3) ,OST4) ,OST5) , (WBP1,OST1) ) ) |
| 18 |
(SUI1,PRP6) |
| 19 |
(MRPL19, (MRPL16, (MRPL10,MRPL9) ) ) |
| 20 |
(YGR262C,APG12) |
| 21 |
(HSM3,RAD23) |
| 22 |
(CLN1,CLN2) |
| 23 |
(SOR1,YDL246C) |
| 24 |
(MCD1,IRR1) |
| 25 |
( ( ( (NUP133,NUP85) ,NUP145) ,NUP120) ,NUP84) |
| 26 |
(SLA2,ABP1) |
| 27 |
( (TIF4632,TIF4631) ,CDC33) |
| 28 |
(SIR4,SIR3) |
| 29 |
(APC9, ( ( (APC4,CDC16) , ( ( (APC11,APC5) ,CDC23) ,APC2) ) , ( (DOC1, (CDC27,APC1) ) ,CDC26) ) ) |
| 30 |
( (PRP3,PRP31) , (SNU66, ( (PRP4,SNU114) ,SMB1) ) ) |
| 31 |
(SRV2,ACT1) |
| 32 |
( (YJL069C, ( ( (KRR1,PWP2) ,YGR090W) ,YER082C) ) ,ENP1) |
| 33 |
(SEH1,SEC13) |
| 34 |
( (RFX1,NHP6B) ,NHP10) |
| 35 |
( ( ( ( ( (ORC6,ORC4) ,ORC2) ,ORC5) ,ORC3) ,CDC6) ,ORC1) |
| 36 |
( (ISW2,VPS1) ,MOT1) |
| 37 |
( (SRB9,SSN3) ,SSN8) |
| 38 |
(MAK5, ( ( (YDR060W,NOP4) ,YDL213C) ,ELA1) ) |
| 39 |
(RPF1,DNL4) |
| 40 |
(GAR1,CBF5) |
| 41 |
(YEL015W,DCP2) |
| 42 |
(SNZ1, (SNZ2,SNZ3) ) |
| 43 |
( (SHG1,YDR469W) , ( ( ( (BRE2,SET1) ,SPP1) ,SWD1) ,SWD3) ) |
| 44 |
(TAF40,TAF19) |
| 45 |
(CDC46,DNA43) |
| 46 |
( ( ( (ARC15,ARC18) ,ARC35) , (ARC19,ARC40) ) , (ARP3,ARP2) ) |
| 47 |
(CKS1,CDC28) |
| 48 |
(YKL214C,YRA1) |
| 49 |
(VPS8,VPS41) |
| 50 |
(SSB1,SSA1) |
| 51 |
( ( (YFR024C,YSC84) ,SLA1) ,BZZ1) |
| 52 |
( ( ( ( (HOS2,YIL112W) ,SNT1) ,SIF2) ,HST1) ,SET3) |
| 53 |
(SEC16, (ERV25,EMP24) ) |
| 54 |
(BOI1,BOI2) |
| 55 |
( (ATP17,ATP5) , ( (ATP18, (ATP1,ATP2) ) , (ATP6,ATP7) ) ) |
| 56 |
(TFG1,TFG2) |
| 57 |
(LCB2,SEC7) |
| 58 |
(TRS120,TRS130) |
| 59 |
(RPB4, ( (RPB7,RPB3) , (RPB2,RPO21) ) ) |
| 60 |
( (PPH21,PPH22) ,TPD3) |
| 61 |
(YBL049W,YCL039W) |
| 62 |
( ( (RET3,SEC28) , (SEC26,SEC21) ) , ( (RET2, (COP1,SEC27) ) , ( (BET1,BOS1) ,SEC22) ) ) |
| 63 |
( (VMA2,VMA8) , ( (STV1,VPH1) ,VMA7) ) |
| 64 |
( ( (YMR288W,RSE1) ,LEA1) , (PRP21,PRP9) ) |
| 65 |
( (SRB7,SRB2) ,SRB4) |
| 66 |
(YPR171W, (YGR268C,YOR284W) ) |
| 67 |
(SDS3,UME1) |
| 68 |
(SMC4,NUM1) |
| 69 |
(PEX17,PEX13) |
| 70 |
(ARG80,MCM1) |
| 71 |
(YKR060W, ( ( (YDR449C,MPP10) , (YLR409C,YDR324C) ) ,NAN1) ) |
| 72 |
(SEN15,HRR25) |
| 73 |
(YDL076C, (RPD3,SIN3) ) |
| 74 |
(STI1,CPR6) |
| 75 |
(BNR1,BNI1) |
| 76 |
(IST1,GCD11) |
| 77 |
( (CDC10,CDC12) , (CDC3,CDC11) ) |
| 78 |
(KAP120,SSA2) |
| 79 |
( ( (GCD2,SUI3) , ( (GCD6,GCD1) ,GCN3) ) , (SUI2,GCD7) ) |
| 80 |
(YGR089W,NNF1) |
| 81 |
(YPT53,VPS21) |
| 82 |
( ( (RFC5,RFC4) ,RFC3) ,RFC2) |
| 83 |
(VPS17,VPS29) |
| 84 |
(SNO1,YMR322C) |
| 85 |
(BMH1,BMH2) |
| 86 |
(TFS1,NSP1) |
| 87 |
(PCL7,PCL6) |
| 88 |
( ( (NUP60,NUP2) ,NUP1) , ( ( ( (NUP49,NUP57) , (NUP42,NUP100) ) ,NUP116) ,GSP1) ) |
| 89 |
(YLR097C,HRT1) |
| 90 |
(CLA4, (GIC1,GIC2) ) |
| 91 |
( ( ( ( (YGR156W,RNA14) , (YTH1, ( ( ( ( ( (CFT1, (YKL059C,CFT2) ) ,YSH1) ,PAP1) , (REF2,PTA1) ) ,FIP1) ,PFS2) ) ) ,SWD2) ,HCA4) ,GLC7) |
| 92 |
(RFA3,RAD59) |
| 93 |
( (HOR2,RHR2) ,AAC3) |
| 94 |
( (RPA190,RPA12) ,RPA135) |
| 95 |
(SAH1,CYS4) |
| 96 |
( (EPL1,ESA1) ,ARP4) |
| 97 |
(YLR106C, (YNL182C,YHR197W) ) |
| 98 |
(BMS1,SIK1) |
| 99 |
( ( (ELP4,ELP6) , ( (ELP3,IKI1) ,ELP2) ) ,IKI3) |
| 100 |
(GCN2,NHP2) |
| 101 |
(TSM1,TAF25) |
| 102 |
( ( ( ( (RRP6,RRP4) ,RRP43) , (RRP42,MTR3) ) , (CSL4, ( (SKI6,RRP45) , (DIS3,RRP46) ) ) ) ,SKI7) |
| 103 |
(YGR128C,DIP2) |
| 104 |
(YGR215W,YGL129C) |
| 105 |
(YMR145C,BGL2) |
| 106 |
( ( ( (YPT32,YPT10) ,YPT7) , (SEC4, (YPT31,YPT1) ) ) ,YPT52) |
| 107 |
( (HHT1,HTB1) , (HTA1,HHF1) ) |
| 108 |
(STE20,FAR1) |
| 109 |
(ACO1,YGL245W) |
| 110 |
(YGR010W,YLR328W) |
| 111 |
(SNF4,SNF1) |
| 112 |
(DED81,PDR13) |
| 113 |
(FOL2,POR1) |
| 114 |
(SYS1,YBR098W) |
| 115 |
(QCR2,COR1) |
| 116 |
(YKL014C, (YPL012W,NOP12) ) |
| 117 |
(FUS3,KSS1) |
| 118 |
(SPH1,SPA2) |
| 119 |
( (KCC4,GIN4) ,YDL225W) |
| 120 |
( (SEC34,SED5) ,SEC35) |
| 121 |
( (VPS16,PEP5) ,VPS33) |
| 122 |
(CLB1,CLB3) |
| 123 |
(SBA1, (HSC82,HSP82) ) |
| 124 |
( (AAD14,HPA3) ,YIP3) |
| 125 |
(UBP7, (MYO3,MYO5) ) |
| 126 |
( ( ( (PRE9,PRE6) ,PRE5) , (PUP3,PRE4) ) , (PRE2, (SCL1,PRE8) ) ) |
| 127 |
(VMA13, (VMA4,VMA1) ) |
| 128 |
(THI4,YNK1) |
| 129 |
(YMR192W, (YNL094W,LAS17) ) |
| 130 |
(YDR430C,PDB1) |
| 131 |
( ( ( (SYF2,ISY1) , ( (PRP19,CLF1) ,SYF1) ) ,SNT309) ,ECM2) |
| 132 |
(YDR214W,PRB1) |
| 133 |
(RAD52, (MSH6,RFA1) ) |
| 134 |
( ( ( (PRP24, (DCP1,PAT1) ) , ( ( ( (LSM6, (LSM7,LSM5) ) ,LSM2) , (LSM3,LSM8) ) ,LSM4) ) ,LSM1) ,KEM1) |
| 135 |
(COF1,CPH1) |
| 136 |
(SRM1,NTF2) |
| 137 |
( (CDD1, (ECM31,PRO3) ) ,YJL199C) |
| 138 |
( ( ( ( (DRS1,PUF6) , ( ( (RLP7, (NOG1, (YHR052W,YGR103W) ) ) , (YTM1,HAS1) ) ,YER006W) ) ,DBP10) , ( ( (SDA1,YLR074C) ,YER126C) , ( ( (SSF1, ( (YNL110C,YKR081C) ,NOP2) ) ,YMR049C) ,CDC95) ) ) ,YGL111W) |
| 139 |
( ( (RPB8, (RPO26,RPB5) ) ,RPB10) ,RPC19) |
| 140 |
(YHR105W,VAM7) |
| 141 |
(HIR2,HIR1) |
| 142 |
(YKR046C,PET9) |
| 143 |
( ( ( (MRPL7, (MRPL4,MRP7) ) ,MRPL28) , ( (YML025C,MRPL35) ,MRPL3) ) ,MRPL8) |
| 144 |
(RLR1,GBP2) |
| 145 |
(MSS116,YLR432W) |
| 146 |
( (TAF61,ADR1) , ( (GCN4, (NGG1,ADA2) ) , ( (TAF17, ( (TAF145,TAF90) ,TAF60) ) ,SPT15) ) ) |
| 147 |
(MYO4,MYO2) |
| 148 |
( (HCR1, ( (TIF34,TIF35) , (NIP1, (PRT1,RPG1) ) ) ) ,TIF5) |
| 149 |
(YEL017W,GTT1) |
| 150 |
(RPC31, ( (RPC37,RPC53) , (RPC82,RET1) ) ) |
| 151 |
( (YPL004C,YGR086C) , (OYE2,CAR2) ) |
| 152 |
(ITC1, (RSC8,ISW1) ) |
| 153 |
(CDC4,GRR1) |
| 154 |
( (VPS35,VPS5) ,PEP8) |
| 155 |
( (ABF1,CHD1) ,FKH1) |
| 156 |
(DPB4, (DPB2,POL2) ) |
| 157 |
( ( ( ( ( ( ( (MRP1,YNL306W) ,RSM10) ,NAM9) ,RSM22) ,RSM25) ,MRPS9) ,MRP13) ,MRP51) |
| 158 |
( ( ( (YPR144C,IMP3) ,YDL148C) ,YLR186W) , (ECM16, ( ( (YJL109C,KRE33) ,NOP1) ,YBL004W) ) ) |
| 159 |
( (BEM1,CDC24) ,CDC42) |
| 160 |
(SME1, ( ( ( (SPP381, (SMX2,SMX3) ) ,PRP8) ,SMD1) ,CUS1) ) |
| 161 |
( (YGL104C, (YJL151C, (YPL246C,KTR3) ) ) ,YKR030W) |
| 162 |
( (RTF1, ( ( (CDC73,PAF1) ,CTR9) ,LEO1) ) ,SPT5) |
| 163 |
(TIM54,MRS5) |
| 164 |
(MHR1,YDR116C) |
| 165 |
(MUD2,MSL5) |
| 166 |
(YGL099W,YDR101C) |
| 167 |
(YGR161C,RTS1) |
| 168 |
(ACF2,YJR083C) |
| 169 |
( ( ( (MED11, ( (MED1,RGR1) , ( (MED6,MED8) ,MED4) ) ) ,CSE2) , ( (NUT1, (SRB8,SRB5) ) ,SIN4) ) ,PGD1) |
| 170 |
(CDH1,CDC20) |
| 171 |
(BBP1,NIP29) |
| 172 |
( (SWI3,SNF2) ,SNF5) |
| 173 |
(GSY1,GSY2) |
| 174 |
( ( ( ( ( (SNU56,STO1) , ( (YHC1, (SNU71,LUC7) ) ,NAM8) ) ,CBC2) , (MUD1,SNP1) ) , ( ( (PRP39,PRP40) ,PRP42) ,SMD2) ) ,SMD3) |
| 175 |
(FPR4, (BRX1,YOR206W) ) |
| 176 |
(PRI2,PRI1) |
| 177 |
( (DUT1,ECI1) ,HPA2) |
| 178 |
(ERG10,ACS2) |
| 179 |
(YOR145C,DIM1) |
| 180 |
(SOD1,UBA1) |
| 181 |
(SAR1, (SEC24,SEC23) ) |
| 182 |
( (HFI1,TRA1) , (SPT20, (GCN5,SPT7) ) ) |
| 183 |
(IPP1,MDH1) |
| 184 |
(SAP190,SAP185) |
| 185 |
(MKK1,MKK2) |
| 186 |
(YNL041C,YPR105C) |
| 187 |
(UFD2,CDC48) |
| 188 |
(YAP6,STD1) |
| 189 |
( ( ( (CAF130, ( (SIG1,NOT5) , (CAF40, (CDC39,CCR4) ) ) ) ,POP2) ,CDC36) ,NOT3) |
| 190 |
( (EFD1,CTF8) ,POL30) |
| 191 |
(CDC5,RAD53) |
| 192 |
(MNN10,ANP1) |
| 193 |
( (NRD1,NAB3) ,YML117W) |
| 194 |
( (STE7,STE11) ,STE5) |
| 195 |
( (MTR10,CRM1) , ( (PAB1,MSN5) , (KAP123,PSE1) ) ) |
| 196 |
(CDC40, ( (YGR278W,YDL209C) ,PRP43) ) |
| 197 |
( (NYV1,VAM3) , (YKT6, (VTI1,SEC17) ) ) |
| 198 |
(GCN1,ECM29) |
| 199 |
( (YGR232W,RPN1) , ( (YLR421C, ( ( ( ( ( ( (UBP6,RPN12) ,YGL004C) , ( ( ( (RPT1,RPN6) ,RPN5) ,RPT3) , (PRE1,RPN10) ) ) ,RPN11) , ( ( (RPT2,RPN3) ,RPN8) , (RPN9,RPT6) ) ) ,RPN7) ,RPT4) ) ,RPT5) ) |
| 200 |
(SMC2, (YDL074C, ( (SMC1,NUF2) ,SMC3) ) ) |
| 201 |
( (WTM1, (SOF1,CAF4) ) , (CDC55,STE4) ) |
|